Index

A

AnalogAnalysis (class in spikeanalysis)

autocorrelogram() (spikeanalysis.SpikeAnalysis method)

C

compute_event_interspike_intervals() (spikeanalysis.MergedSpikeAnalysis method) (spikeanalysis.SpikeAnalysis method)

create_neo_reader() (spikeanalysis.StimulusData method)

D

delete_events() (spikeanalysis.StimulusData method)

denoise_data() (spikeanalysis.SpikeData method) digitize_analog_data() (spikeanalysis.StimulusData method)

G

generate_pcs() (spikeanalysis.SpikeData method) generate_qcmetrics() (spikeanalysis.SpikeData method) generate_stimulus_trains() (spikeanalysis.StimulusData method) get_all_files() (spikeanalysis.StimulusData method) get_amplitudes() (spikeanalysis.SpikeData method) get_analog_data() (spikeanalysis.StimulusData method) get_final_digital_data() (spikeanalysis.StimulusData method) get_interspike_intervals() (spikeanalysis.MergedSpikeAnalysis method) (spikeanalysis.SpikeAnalysis method)

get_raw_digital_data() (spikeanalysis.StimulusData method) get_raw_firing_rate() (spikeanalysis.MergedSpikeAnalysis method) (spikeanalysis.SpikeAnalysis method) get_raw_psth() (spikeanalysis.MergedSpikeAnalysis method) (spikeanalysis.SpikeAnalysis method) get_responsive_neurons() (spikeanalysis.SpikeAnalysis method) get_stimulus_channels() (spikeanalysis.StimulusData method) get_template_positions() (spikeanalysis.SpikeData method) get_waveform_values() (spikeanalysis.SpikeData method) get_waveforms() (spikeanalysis.SpikeData method)

I

IntrinsicPlotter (class in spikeanalysis)

K

kolmo_smir_stats() (in module spikeanalysis)

L

latencies() (spikeanalysis.MergedSpikeAnalysis method) (spikeanalysis.SpikeAnalysis method)

M

MergedSpikeAnalysis (class in spikeanalysis)

module spikeanalysis

P

plot_acgs() (spikeanalysis.IntrinsicPlotter method) plot_correlations() (spikeanalysis.SpikePlotter method) plot_event_isi() (spikeanalysis.SpikePlotter method) plot_isi() (spikeanalysis.SpikePlotter method) plot_latencies() (spikeanalysis.SpikePlotter method) plot_pcs() (spikeanalysis.IntrinsicPlotter method) plot_raster() (spikeanalysis.SpikePlotter method)

plot_raw_firing() (spikeanalysis.SpikePlotter method) plot_response_trace() (spikeanalysis.SpikePlotter method) plot_sm_fr() (spikeanalysis.SpikePlotter method) plot_spike_depth_fr() (spikeanalysis.IntrinsicPlotter method) plot_waveforms() (spikeanalysis.IntrinsicPlotter method) plot_zscores() (spikeanalysis.SpikePlotter method) plot_zscores_ind() (spikeanalysis.SpikePlotter method) prevalence_counts() (in module spikeanalysis)

Q

qc_preprocessing() (spikeanalysis.SpikeData method)

R

refractory_violation() (spikeanalysis.SpikeData method) reload_data() (spikeanalysis.SpikeData method)

run_all() (spikeanalysis.SpikeData method) (spikeanalysis.StimulusData method)

S

samples_to_seconds() (spikeanalysis.SpikeData method) save_events() (spikeanalysis.StimulusData method) save_responsive_neurons() (spikeanalysis.SpikeAnalysis method) save_z_parameters() (spikeanalysis.SpikeAnalysis method) set_analysis() (spikeanalysis.SpikePlotter method) set_caching() (spikeanalysis.SpikeData method) set_qc() (spikeanalysis.SpikeData method) set_spike_data() (spikeanalysis.SpikeAnalysis method) set_spike_data_si() (spikeanalysis.SpikeAnalysis method)

set_stimulus_data() (spikeanalysis.SpikeAnalysis method) set_trial_groups() (spikeanalysis.StimulusData method) spike_triggered_average() (spikeanalysis.AnalogAnalysis method) spikeanalysis module SpikeAnalysis (class in spikeanalysis) SpikeData (class in spikeanalysis) SpikePlotter (class in spikeanalysis) StimulusData (class in spikeanalysis)

T

trial_correlation() (spikeanalysis.MergedSpikeAnalysis method) (spikeanalysis.SpikeAnalysis method)

Z

z_score_data() (spikeanalysis.MergedSpikeAnalysis method) (spikeanalysis.SpikeAnalysis method)